By Yi-Ping Phoebe Chen, Sven Hartmann, Markus Kirchberg (auth.), Il-Yeol Song, Mario Piattini, Yi-Ping Phoebe Chen, Sven Hartmann, Fabio Grandi, Juan Trujillo, Andreas L. Opdahl, Fernando Ferri, Patrizia Grifoni, Maria Chiara Caschera, Colette Rolland, Carso
This booklet constitutes the refereed joint lawsuits of 7 foreign workshops held along side the twenty seventh foreign convention on Conceptual Modeling, ER 2008, in Barcelona, Spain, in October 2008.
The forty two revised complete papers awarded have been rigorously reviewed and chosen from 108 submissions. issues addressed by means of the workshops are conceptual modeling for all times sciences functions (CMLSA 2008), evolution and alter in info administration (ECDM 2008), foundations and practices of UML (FP-UML 2008), modeling cellular functions and companies (M2AS 2008), requisites, intentions and pursuits in conceptual modeling (RIGiM 2008), semantic and conceptual concerns in geographic info platforms (SeCoGIS 2008), and net details platforms modeling (WISM 2008).
Read Online or Download Advances in Conceptual Modeling – Challenges and Opportunities: ER 2008 Workshops CMLSA, ECDM, FP-UML, M2AS, RIGiM, SeCoGIS, WISM, Barcelona Spain, October 20-23, 2008. Proceedings PDF
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Additional resources for Advances in Conceptual Modeling – Challenges and Opportunities: ER 2008 Workshops CMLSA, ECDM, FP-UML, M2AS, RIGiM, SeCoGIS, WISM, Barcelona Spain, October 20-23, 2008. Proceedings
Section 2 describes the IGIPI abstractions for biological processes with application on yeast . Section 3 describes extensions of IGIPI for biomedical information with application on cancer. Section 4 discusses analyzing and reasoning with online information. Section 5 puts in the context of related work. Section 6 concludes the paper. Integration of Genomic, Proteomic and Biomedical Information 2 35 Integrating Biological Process Information: Timegoals The IGIPI framework is based on the concept of timegoals.
A biological process is a network of gene or protein interactions. Integration involves representing the experimental and environmental conditions associated with diﬀerent studies, under which a biological process may be observed. Moreover, genes’ and proteins’ contributions under diﬀerent conditions should be unambiguously represented. Diﬀerent studies and conditions often suggest conﬂicting results on a network of gene or protein interactions, highlighting the non-triviality of integration. The contributions of biological processes to a medical condition, such as cancer, can also be represented with IGIPI.
In BioSem, there are two specific compositional relationships: “Sequential aggregation” and “Segment”. Segment indicates where one entity starts and where it ends in the other entity. For example, in the segment relationship between DNA and Genes, one DNA could have many different genes in different segments. Similarly protein secondary structures and protein domains have a “segment link”. Sequential aggregation refers to the position of one entity within an aggregate entity. For example, a DNA sequence may consist of many nucleic acids.
Advances in Conceptual Modeling – Challenges and Opportunities: ER 2008 Workshops CMLSA, ECDM, FP-UML, M2AS, RIGiM, SeCoGIS, WISM, Barcelona Spain, October 20-23, 2008. Proceedings by Yi-Ping Phoebe Chen, Sven Hartmann, Markus Kirchberg (auth.), Il-Yeol Song, Mario Piattini, Yi-Ping Phoebe Chen, Sven Hartmann, Fabio Grandi, Juan Trujillo, Andreas L. Opdahl, Fernando Ferri, Patrizia Grifoni, Maria Chiara Caschera, Colette Rolland, Carso